clinical analysis

12月 142020
 

Do you need to see how long patients have been treated for? Would you like to know if a patient’s dose has changed, or if the patient experienced any dose interruptions? If so, you can use a Napoleon plot, also known as a swimmer plot, in conjunction with your exposure data set to find your answers. We demonstrate how to find the answer in our recent book SAS® Graphics for Clinical Trials by Example.

You may be wondering what a Napoleon plot is? Have you ever heard of the map of Napoleon’s Russian campaign? It was a map that displayed six types of data, such as troop movement, temperature, latitude, and longitude on one graph (Wikipedia). In the clinical setting, we try to mimic this approach by displaying several different types of safety data on one graph: hence, the name “Napoleon plot.” The plot is also known as a swimmer plot because each patient has a row in which their data is displayed, which looks like swimming lanes.

Code

Now that you know what a Napoleon plot is, how do you produce it? In essence, you are merely writing GTL code to produce the graph you need. In order to generate a Napoleon plot, some key GTL statements that are used are DISCRETEATTRMAP, HIGHLOWPLOT, SCATTERPLOT and DISCRETELEGEND. Other plot statements are used, but the statements that were just mentioned are typically used for all Napoleon plot. In our recent book, one of the chapters carefully walks you through each step to show you how to produce the Napoleon plot. Program 1, below, gives a small teaser of some of the code used to produce the Napoleon Plot.

Program 1: Code for Napoleon Plot That Highlights Dose Interruptions

	   discreteattrmap name = "Dose_Group";
            value "54" / fillattrs = (color = orange) 
                         lineattrs = (color = orange pattern = solid);     
            value "81" / fillattrs = (color = red) 
                         lineattrs = (color = red pattern = solid);
         enddiscreteattrmap;
 
         discreteattrvar attrvar = id_dose_group var = exdose attrmap = "Dose_Group";
 
         legenditem type = marker name = "54_marker" /
            markerattrs = (symbol = squarefilled color = orange)
            label = "Xan 54mg";
 
         < Other legenditem statements >
 
 
	     layout overlay / yaxisopts = (type = discrete 
                                         display = (line label)     
                                         label = "Patient")
 
	        highlowplot y = number 
                          high = eval(aendy/30.4375) 
                          low = eval(astdy/30.4375) / 
                 group = id_dose_group                       
                 type = bar 
                 lineattrs = graphoutlines 
                 barwidth = 0.2;
		 scatterplot y = number x = eval((max_aendy + 10)/30.4375) /      
                 markerattrs = (symbol = completed size = 12px);               
		 discretelegend "54_marker" "81_marker" "completed_marker" /  
                 type = marker  
                 autoalign = (bottomright) across = 1                          
                 location = inside title = "Dose";
         endlayout;

Output

Without further ado, Output 1 shows you an example of a Napoleon plot. You can see that there are many patients, and so the patient labels have been suppressed. You also see that the patient who has been on the study the longest has a dose delay indicated by the white space between the red and orange bars. While this example illustrates a simple Napoleon plot with only two types, dose exposure and treatment, the book has more complex examples of swimmer plots.

Output 1: Napoleon Plot that Highlights Dose Interruptions

Napoleon plot with orange and red bars showing dose exposure and treatment

How to create a Napoleon plot with Graph Template Language (GTL) was published on SAS Users.

6月 292012
 

It's so important for companies to build what customers want rather than build a product and then convince the market to buy it. So I love it when I hear or read remarks like the one below - SAS has grown with me. That means that we have listened to your feedback and made SAS software more appropriate to your needs - year after year after year.

 

"I've been using SAS since 1982 and have loved how it has grown with me. Now I use SAS to retrieve data from an Oracle DB to create clinical analyst files of new data points tables; Listing QL report and analysis of clinical measurement! Thanks SAS!"

This is the part of the post where I usually try to help you find more information about the "Inspiration." In a couple of my previous posts, I've looked only at SAS Global Forum 2012 proceedings, but Lex Jansen pointed out that there are many proceedings to choose from. So, I went to his site and searched only on "oracle db." Those terms returned 273 results.

I'd also add that there are many places to find great information about using SAS.  Michelle Homes has blogged about some of those great SAS resources on The Training Post blog. Check it out and then bookmark it!

tags: clinical analysis, Friday's Innovation Inspiration, oracle database
11月 042011
 
Now this is the way you sports fans should be thinking of using SAS! Of course there are no real specifics here, but you guys are pretty smart. Here's an older story about using SAS for sports, and I'm sure you've all seen Money Ball by now. Today's series entrant is [...]